Pseudomonas aeruginosa C51

Strain Overview
Organism Name Pseudomonas aeruginosa C51 - Assembly GCF_000480415.1
Species Pseudomonas aeruginosa
Strain C51
Description/Title Generic sample from Pseudomonas aeruginosa C51
Annotated Genes 6383
Partial Genes 19
Host Information
Geographic Location
Isolation Source environmental isolate
Sample Provider
Name Susanna Hamilton
E-mail suhamil@broadinstitute.org
Institution Broad Institute
Date Collected unknown

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 179
aroE
27
trpE
7
mutL
3
acsA
36
ppsA
13
guaA
28
nuoD
4
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds 18
Contigs 26
Contig N50 1125383
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN02360749
NCBI Taxonomy ID 1402577
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information

Annotated Features

Feature Count
gene 6372
CDS 6296
tRNA 64
rRNA 12
pseudo 11

Subcellular Localization

Localization Count
Cytoplasmic 2839
Unknown 1458
Cytoplasmic Membrane 1408
Periplasmic 174
Outer Membrane 172
Unknown (This protein may have multiple localization sites) 158
Extracellular 87
Flagellar 17
Fimbrial 8
T3SS 4

Replicons

18 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF