Strain Overview | |
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Organism Name | Pseudomonas aeruginosa C51 - Assembly GCF_000480415.1 |
Species | Pseudomonas aeruginosa |
Strain | C51 |
Description/Title | Generic sample from Pseudomonas aeruginosa C51 |
Annotated Genes | 6383 |
Partial Genes | 19 |
Host Information |
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Geographic Location | |
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Isolation Source | environmental isolate |
Sample Provider | |
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Name | Susanna Hamilton |
suhamil@broadinstitute.org | |
Institution | Broad Institute |
Date Collected | unknown |
Database | Scheme | Sequence Type | Alleles | |||||||
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PubMLST | paeruginosa | 179 |
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Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). |
Assembly | |
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Assembly DB |
RefSeq
|
Assembly Accession | |
Assembly Status | latest |
Scaffolds | 18 |
Contigs | 26 |
Contig N50 | 1125383 |
Assembly Level | Scaffold |
Percent GC |
Cross-References | |
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NCBI BioSample Accession | SAMN02360749 |
NCBI Taxonomy ID | 1402577 |
NCBI Bioprojects |
Related Data | |
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Additional Genome Project Info | |
Sequencing Information | |
Genome Assembly Information |
Feature | Count |
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gene | 6372 |
CDS | 6296 |
tRNA | 64 |
rRNA | 12 |
pseudo | 11 |
Localization | Count |
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Cytoplasmic | 2839 |
Unknown | 1458 |
Cytoplasmic Membrane | 1408 |
Periplasmic | 174 |
Outer Membrane | 172 |
Unknown (This protein may have multiple localization sites) | 158 |
Extracellular | 87 |
Flagellar | 17 |
Fimbrial | 8 |
T3SS | 4 |
Genomic | ORF DNA | Intergenic | Amino Acid |
TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |