| Strain Overview | |
|---|---|
| Organism Name | Pseudomonas sp. LAMO17WK12:I4 |
| Species | Pseudomonas sp. |
| Strain | LAMO17WK12:I4 |
| Description/Title | MIGS Cultured Bacterial/Archaeal sample from Pseudomonas sp. LAMO17WK12:I4 |
| Annotated Genes | 5074 |
| Partial Genes | 60 |
| Host Information |
|---|
| Geographic Location | |
|---|---|
| Environmental Feature (?) | not provided; submitted under MIGS 2.1 |
| Environmental Material (?) | not provided; submitted under MIGS 2.1 |
| Sample Provider | |
|---|---|
| Name | |
| Institution | |
| Date Collected | missing |
| Database | Scheme | Sequence Type | Alleles | |
|---|---|---|---|---|
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | 28 |
| Contigs | 31 |
| Contig N50 | 417041 |
| Assembly Level | Scaffold |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN02597224 |
| NCBI Taxonomy ID | 1259800 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Feature | Count |
|---|---|
| gene | 5056 |
| CDS | 4989 |
| tRNA | 58 |
| pseudo | 18 |
| rRNA | 7 |
| ncRNA | 2 |
| Localization | Count |
|---|---|
| Cytoplasmic | 2295 |
| Cytoplasmic Membrane | 1184 |
| Periplasmic | 170 |
| Outer Membrane | 142 |
| Extracellular | 34 |
| Unknown | 1047 |
| Unknown (This protein may have multiple localization sites) | 117 |
| Flagellar | 18 |
| Fimbrial | 2 |
| T3SS | 2 |
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |