| Strain Overview | |
|---|---|
| Organism Name | Pseudomonas umsongensis 20MFCvi1.1 |
| Species | Pseudomonas umsongensis |
| Strain | 20MFCvi1.1 |
| Description/Title | Generic sample from Pseudomonas umsongensis 20MFCvi1.1 |
| Annotated Genes | 5806 |
| Partial Genes | 23 |
| Host Information |
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| Geographic Location |
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| Sample Provider | |
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| Name | |
| Institution | |
| Date Collected | Missing |
| Database | Scheme | Sequence Type | Alleles | |
|---|---|---|---|---|
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | 27 |
| Contigs | 31 |
| Contig N50 | 359989 |
| Assembly Level | Scaffold |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN02440461 |
| NCBI Taxonomy ID | 1151128 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Feature | Count |
|---|---|
| gene | 5796 |
| CDS | 5731 |
| tRNA | 56 |
| pseudo | 10 |
| rRNA | 8 |
| ncRNA | 1 |
| Localization | Count |
|---|---|
| Cytoplasmic | 2594 |
| Cytoplasmic Membrane | 1334 |
| Periplasmic | 193 |
| Outer Membrane | 109 |
| Extracellular | 51 |
| Unknown | 1318 |
| Unknown (This protein may have multiple localization sites) | 132 |
| Flagellar | 17 |
| Fimbrial | 3 |
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |