| Strain Overview | |
|---|---|
| Organism Name | Pseudomonas sp. CFT9 |
| Species | Pseudomonas sp. |
| Strain | CFT9 |
| Description/Title | Sample from Pseudomonas sp. CFT9 |
| Annotated Genes | 5795 |
| Partial Genes | 34 |
| Host Information |
|---|
| Geographic Location | |
|---|---|
| Location Name | USA: Nyack River |
| Isolation Source | hyporheic zone |
| Sample Provider | |
|---|---|
| Name | |
| Institution | |
| Date Collected | Jul-06 |
| Database | Scheme | Sequence Type | Alleles | |
|---|---|---|---|---|
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | |
| Contigs | 67 |
| Contig N50 | 201322 |
| Assembly Level | Contig |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN02469400 |
| NCBI Taxonomy ID | 911244 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Feature | Count |
|---|---|
| gene | 5785 |
| CDS | 5723 |
| tRNA | 59 |
| pseudo | 10 |
| rRNA | 3 |
| Localization | Count |
|---|---|
| Cytoplasmic | 2404 |
| Cytoplasmic Membrane | 1283 |
| Periplasmic | 178 |
| Outer Membrane | 153 |
| Extracellular | 55 |
| Unknown | 1541 |
| Unknown (This protein may have multiple localization sites) | 109 |
| Flagellar | 22 |
| Fimbrial | 7 |
| T3SS | 2 |
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |