| Strain Overview | |
|---|---|
| Organism Name | Pseudomonas sp. PAMC 25886 |
| Species | Pseudomonas sp. |
| Strain | PAMC 25886 |
| Description/Title | Sample from Pseudomonas sp. PAMC 25886 |
| Annotated Genes | 6313 |
| Partial Genes | 48 |
| Host Information |
|---|
| Geographic Location | |
|---|---|
| Location Name | Austria: Innsbruck |
| Isolation Source | glacier's cryoconite |
| Database | Scheme | Sequence Type | Alleles | |
|---|---|---|---|---|
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | |
| Contigs | 95 |
| Contig N50 | 143372 |
| Assembly Level | Contig |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN02470163 |
| NCBI Taxonomy ID | 1125977 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Feature | Count |
|---|---|
| gene | 6303 |
| CDS | 6225 |
| tRNA | 61 |
| rRNA | 14 |
| pseudo | 10 |
| ncRNA | 3 |
| Localization | Count |
|---|---|
| Cytoplasmic | 2728 |
| Cytoplasmic Membrane | 1518 |
| Periplasmic | 244 |
| Outer Membrane | 188 |
| Extracellular | 71 |
| Unknown | 1333 |
| Unknown (This protein may have multiple localization sites) | 143 |
| Flagellar | 19 |
| Fimbrial | 10 |
| T3SS | 4 |
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |