| Strain Overview | |
|---|---|
| Organism Name | Pseudomonas stutzeri MF28 |
| Species | Pseudomonas stutzeri |
| Strain | MF28 |
| Description/Title | Sample from Pseudomonas stutzeri MF28 |
| Annotated Genes | 4508 |
| Partial Genes | 176 |
| Host Information | |
|---|---|
| Host Species Taxonomic Name | Crassostrea virginica |
| Host Species Common Name | eastern oyster |
| Host Species Taxonomy ID | 6565 |
| Geographic Location | |
|---|---|
| Location Name | USA: Florida, Apalachicola Bay |
| Isolation Source | mantle fluid |
| Sample Provider | |
|---|---|
| Name | |
| Institution | |
| Date Collected | 14-Jun-11 |
| Database | Scheme | Sequence Type | Alleles | |
|---|---|---|---|---|
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | |
| Contigs | 91 |
| Contig N50 | 128670 |
| Assembly Level | Contig |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN02471812 |
| NCBI Taxonomy ID | 1333856 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Feature | Count |
|---|---|
| gene | 4480 |
| CDS | 4447 |
| tRNA | 28 |
| pseudo | 28 |
| rRNA | 2 |
| ncRNA | 1 |
| Localization | Count |
|---|---|
| Cytoplasmic | 2036 |
| Cytoplasmic Membrane | 1103 |
| Periplasmic | 123 |
| Outer Membrane | 89 |
| Extracellular | 40 |
| Unknown | 933 |
| Unknown (This protein may have multiple localization sites) | 123 |
| Flagellar | 32 |
| Fimbrial | 3 |
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |