| Strain Overview | |
|---|---|
| Organism Name | Pseudomonas trivialis IHBB745 |
| Species | Pseudomonas trivialis |
| Strain | IHBB745 |
| Description/Title | Microbe sample from Pseudomonas trivialis |
| Annotated Genes | 5886 |
| Partial Genes | 38 |
| Host Information | |
|---|---|
| Host Species Taxonomic Name | Hippophae rhamnoides |
| Host Species Common Name | sea buckthorn |
| Host Species Taxonomy ID | 193516 |
| Host Species Tissue Sampled | not applicable |
| Geographic Location | |
|---|---|
| Location Name | India: Rong Tong, Lahual and Spiti |
| Isolation Source | rhizosphere |
| Latitude/Longitude | 33.5 N 78.4 E |
| Sample Provider | |
|---|---|
| Name | Anil Singh |
| anil@ihbt.res.in | |
| Institution | CSIR-Institute of Himalayan Bioresource Technology |
| Date Collected | 02-May-2008 |
| Database | Scheme | Sequence Type | Alleles | |
|---|---|---|---|---|
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | |
| Contigs | |
| Contig N50 | |
| Assembly Level | Complete Genome |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN03699826 |
| NCBI Taxonomy ID | 200450 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Genome Browsers* | |
|---|---|
| Pseudomonas trivialis strain IHBB745, complete genome. |
| Feature | Count |
|---|---|
| gene | 5842 |
| CDS | 5758 |
| tRNA | 67 |
| pseudo | 44 |
| rRNA | 16 |
| ncRNA | 1 |
| Localization | Count |
|---|---|
| Cytoplasmic | 2511 |
| Cytoplasmic Membrane | 1360 |
| Periplasmic | 200 |
| Outer Membrane | 147 |
| Extracellular | 62 |
| Unknown | 1339 |
| Unknown (This protein may have multiple localization sites) | 139 |
| Name | Length | GC | |
|---|---|---|---|
| Pseudomonas trivialis strain IHBB745, complete genome. | 6452803 bp | 59.9% |
Replicon details
|
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |