| Strain Overview | |
|---|---|
| Organism Name | Pseudomonas parafulva YAB-1 |
| Species | Pseudomonas parafulva |
| Strain | YAB-1 |
| Description/Title | MIGS Cultured Bacterial/Archaeal sample from Pseudomonas parafulva |
| Annotated Genes | 4665 |
| Partial Genes | 49 |
| Host Information |
|---|
| Geographic Location | |
|---|---|
| Location Name | China: Wuhan |
| Isolation Source | sludge |
| Latitude/Longitude | 29.58 N 113.53 E |
| Sample Provider | |
|---|---|
| Name | langbo yi |
| yilangbo@126.com | |
| Institution | Pseudomonas parafulva |
| Date Collected | 20-May-2013 |
| Database | Scheme | Sequence Type | Alleles | |
|---|---|---|---|---|
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | |
| Contigs | 23 |
| Contig N50 | 547316 |
| Assembly Level | Contig |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN03470078 |
| NCBI Taxonomy ID | 157782 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Feature | Count |
|---|---|
| gene | 4634 |
| CDS | 4558 |
| tRNA | 67 |
| pseudo | 31 |
| rRNA | 8 |
| ncRNA | 1 |
| Localization | Count |
|---|---|
| Cytoplasmic | 2032 |
| Cytoplasmic Membrane | 1010 |
| Periplasmic | 144 |
| Outer Membrane | 108 |
| Extracellular | 41 |
| Unknown | 1117 |
| Unknown (This protein may have multiple localization sites) | 106 |
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |