| Strain Overview | |
|---|---|
| Organism Name | Pseudomonas syringae pv. coryli NCPPB 4273 |
| Species | Pseudomonas syringae pv. coryli |
| Strain | NCPPB 4273 |
| Description/Title | Sample from Pseudomonas syringae pv. coryli str. NCPPB 4273 |
| Annotated Genes | 5345 |
| Partial Genes | 82 |
| Host Information | |
|---|---|
| Host Species Taxonomic Name | Corylus avellana |
| Host Species Common Name | European hazelnut |
| Host Species Taxonomy ID | 13451 |
| Geographic Location | |
|---|---|
| Location Name | Italy |
| Isolation Source | hazelnut twig |
| Sample Provider | |
|---|---|
| Name | |
| Institution | CRA |
| Date Collected | 2001 |
| Database | Scheme | Sequence Type | Alleles | |
|---|---|---|---|---|
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | |
| Assembly Status | latest |
| Scaffolds | |
| Contigs | 93 |
| Contig N50 | 105156 |
| Assembly Level | Contig |
| Percent GC | |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN03481961 |
| NCBI Taxonomy ID | 1397690 |
| NCBI Bioprojects | |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information | |
| Feature | Count |
|---|---|
| gene | 5296 |
| CDS | 5238 |
| tRNA | 52 |
| pseudo | 49 |
| rRNA | 4 |
| ncRNA | 2 |
| Localization | Count |
|---|---|
| Cytoplasmic | 2269 |
| Unknown | 1280 |
| Cytoplasmic Membrane | 1212 |
| Periplasmic | 164 |
| Unknown (This protein may have multiple localization sites) | 124 |
| Outer Membrane | 116 |
| Extracellular | 73 |
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |