Pseudomonas syringae pv. syringae B301D

Strain Overview
Organism Name Pseudomonas syringae pv. syringae B301D
Species Pseudomonas syringae pv. syringae
Strain B301D
Description/Title MIGS Cultured Bacterial/Archaeal sample from Pseudomonas syringae pv. syringae B301D
Annotated Genes 5265
Partial Genes 67
Host Information
Host Species Taxonomic Name Pyrus communis
Host Species Common Name pear
Host Species Taxonomy ID 23211
Geographic Location
Location Name United Kingdom: England
Isolation Source diseased flower
Latitude/Longitude 51.1900 N 0.7300 E
Sample Provider
Name Dennis Gross
E-mail d-gross@tamu.edu
Institution Texas A&M University
Date Collected 1959

MLST Data

Database Scheme Sequence Type Alleles
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000988485.1
Assembly Status latest
Scaffolds
Contigs
Contig N50
Assembly Level Complete Genome
Percent GC
Cross-References
NCBI BioSample Accession SAMN03267739
NCBI Taxonomy ID 1324931
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details
Genome Browsers*
Pseudomonas syringae pv. syringae B301D, complete genome.

Annotated Features

Feature Count
gene 5197
CDS 5114
pseudo 68
tRNA 66
rRNA 16
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2217
Unknown 1253
Cytoplasmic Membrane 1182
Periplasmic 168
Unknown (This protein may have multiple localization sites) 124
Outer Membrane 109
Extracellular 61

Replicons

Name Length GC
Pseudomonas syringae pv. syringae B301D, complete genome. 6094819 bp 59.2%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF