| Strain Overview | |
|---|---|
| Organism Name | Pseudomonas syringae pv. syringae HS191 - Assembly GCF_000988395.1 |
| Species | Pseudomonas syringae pv. syringae |
| Strain | HS191 |
| Description/Title | MIGS Cultured Bacterial/Archaeal sample from Pseudomonas syringae pv. syringae HS191 |
| Annotated Genes | 5224 |
| Partial Genes | 83 |
| Host Information | |
|---|---|
| Host Species Taxonomic Name | Panicum miliaceum |
| Host Species Common Name | proso millet |
| Host Species Taxonomy ID | 4540 |
| Geographic Location | |
|---|---|
| Location Name | Australia |
| Isolation Source | diseased vegetative millet |
| Latitude/Longitude | 35.3080 S 149.1245 E |
| Sample Provider | |
|---|---|
| Name | Dennis Gross |
| d-gross@tamu.edu | |
| Institution | Texas A&M University |
| Date Collected | 1969 |
| Database | Scheme | Sequence Type | Alleles | |
|---|---|---|---|---|
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | |
| Assembly Status | latest |
| Scaffolds | |
| Contigs | |
| Contig N50 | |
| Assembly Level | Complete Genome |
| Percent GC | |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN03267749 |
| NCBI Taxonomy ID | 1324932 |
| NCBI Bioprojects | |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information | |
| Genome Browsers* | ||
|---|---|---|
| Pseudomonas syringae pv. syringae HS191 plasmid, complete sequence. | ||
| Pseudomonas syringae pv. syringae HS191, complete genome. | ||
| Feature | Count |
|---|---|
| gene | 5164 |
| CDS | 5080 |
| tRNA | 67 |
| pseudo | 60 |
| rRNA | 16 |
| ncRNA | 1 |
| Localization | Count |
|---|---|
| Cytoplasmic | 2190 |
| Unknown | 1250 |
| Cytoplasmic Membrane | 1172 |
| Periplasmic | 161 |
| Unknown (This protein may have multiple localization sites) | 121 |
| Outer Membrane | 111 |
| Extracellular | 75 |
| Name | Length | GC | |
|---|---|---|---|
| Pseudomonas syringae pv. syringae HS191 plasmid, complete sequence. | 52548 bp | 54.4% |
Replicon details
|
| Pseudomonas syringae pv. syringae HS191, complete genome. | 5950211 bp | 59.0% |
Replicon details
|
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |