| Strain Overview | |
|---|---|
| Organism Name | Pseudomonas putida LS46 - Assembly GCF_000294445.2 |
| Species | Pseudomonas putida |
| Strain | LS46 |
| Description/Title | Sample from Pseudomonas putida LS46 |
| Annotated Genes | 5346 |
| Partial Genes | 46 |
| Host Information |
|---|
| Geographic Location | |
|---|---|
| Location Name | Canada |
| Isolation Source | wastewater |
| Sample Provider | |
|---|---|
| Name | |
| Institution | |
| Date Collected | Jun-09 |
| Database | Scheme | Sequence Type | Alleles | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| PubMLST | pputida | - |
|
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| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | |||||||||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | |
| Contigs | 32 |
| Contig N50 | 407829 |
| Assembly Level | Contig |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN02471870 |
| NCBI Taxonomy ID | 1193146 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Feature | Count |
|---|---|
| gene | 5339 |
| CDS | 5241 |
| tRNA | 76 |
| rRNA | 22 |
| pseudo | 7 |
| Localization | Count |
|---|---|
| Cytoplasmic | 2328 |
| Cytoplasmic Membrane | 1212 |
| Periplasmic | 155 |
| Outer Membrane | 138 |
| Extracellular | 45 |
| Unknown | 1233 |
| Unknown (This protein may have multiple localization sites) | 130 |
| Flagellar | 17 |
| Fimbrial | 6 |
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |