| Strain Overview | |
|---|---|
| Organism Name | Pseudomonas syringae B576 |
| Species | Pseudomonas syringae |
| Strain | B576 |
| Description/Title | Pathogen: environmental/food/other sample from Pseudomonas syringae |
| Annotated Genes | 5002 |
| Partial Genes | 74 |
| Host Information |
|---|
| Geographic Location | |
|---|---|
| Location Name | China |
| Isolation Source | plants |
| Latitude/Longitude | 38.98 N 77.11 E |
| Sample Provider | |
|---|---|
| Name | Meng yang |
| yangmeng2019@gmail.com | |
| Institution | BIG |
| Date Collected | missing |
| Database | Scheme | Sequence Type | Alleles | |
|---|---|---|---|---|
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | |
| Assembly Status | latest |
| Scaffolds | |
| Contigs | 39 |
| Contig N50 | 351462 |
| Assembly Level | Contig |
| Percent GC | |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN03104821 |
| NCBI Taxonomy ID | 317 |
| NCBI Bioprojects | |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information | |
| Feature | Count |
|---|---|
| gene | 4955 |
| CDS | 4889 |
| tRNA | 60 |
| pseudo | 47 |
| rRNA | 5 |
| ncRNA | 1 |
| Localization | Count |
|---|---|
| Cytoplasmic | 2155 |
| Cytoplasmic Membrane | 1158 |
| Unknown | 1121 |
| Periplasmic | 162 |
| Unknown (This protein may have multiple localization sites) | 125 |
| Outer Membrane | 104 |
| Extracellular | 64 |
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |