Pseudomonas syringae CC1557

Strain Overview
Organism Name Pseudomonas syringae CC1557
Species Pseudomonas syringae
Strain CC1557
Description/Title Sample from Pseudomonas syringae CC1557
Annotated Genes 5137
Partial Genes 99
Host Information
Geographic Location
Location Name France
Isolation Source Snow

MLST Data

Database Scheme Sequence Type Alleles
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000452705.1
Assembly Status latest
Scaffolds
Contigs
Contig N50
Assembly Level Complete Genome
Percent GC
Cross-References
NCBI BioSample Accession SAMN02471566
NCBI Taxonomy ID 1357279
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details
Genome Browsers*
Pseudomonas syringae CC1557, complete sequence.
Pseudomonas syringae CC1557 plasmid pCC1557, complete sequence.

Annotated Features

Feature Count
gene 5055
CDS 4976
pseudo 82
tRNA 62
rRNA 16
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2123
Cytoplasmic Membrane 1172
Periplasmic 158
Outer Membrane 107
Extracellular 61
Unknown 1246
Unknown (This protein may have multiple localization sites) 109

Replicons

Name Length GC
Pseudomonas syringae CC1557, complete sequence. 5758024 bp 58.6%
Replicon details
Pseudomonas syringae CC1557 plasmid pCC1557, complete sequence. 53629 bp 54.1%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF