Pseudomonas stutzeri NT0128

Strain Overview
Organism Name Pseudomonas stutzeri NT0128
Species Pseudomonas stutzeri
Strain NT0128
Description/Title MIGS Cultured Bacterial/Archaeal sample from Pseudomonas stutzeri
Annotated Genes 4476
Partial Genes 62
Host Information
Host Species Taxonomic Name Triticum turgidum
Host Species Common Name English wheat
Host Species Taxonomy ID 4571
Geographic Location
Location Name Israel: West Negev region
Isolation Source soil
Latitude/Longitude 31.21 N 34.27 E
Sample Provider
Name Sammy Frenk
E-mail sammy@volcani.agri.gov.il
Institution Volcani Research Center
Date Collected 2014-06-01

MLST Data

Database Scheme Sequence Type Alleles
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000952685.1
Assembly Status latest
Scaffolds
Contigs 50
Contig N50 250415
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN03352191
NCBI Taxonomy ID 316
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 4459
CDS 4390
tRNA 53
pseudo 17
rRNA 15
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2045
Cytoplasmic Membrane 1090
Periplasmic 129
Outer Membrane 92
Extracellular 47
Unknown 862
Unknown (This protein may have multiple localization sites) 125

Replicons

47 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF