| Strain Overview | |
|---|---|
| Organism Name | Pseudomonas sp. StFLB209 |
| Species | Pseudomonas sp. |
| Strain | StFLB209 |
| Description/Title | MIGS Cultured Bacterial/Archaeal sample from Pseudomonas sp. StFLB209 |
| Annotated Genes | 5622 |
| Partial Genes | 122 |
| Host Information | |
|---|---|
| Host Species Taxonomic Name | Solanum tuberosum |
| Host Species Common Name | potato |
| Host Species Taxonomy ID | 4113 |
| Geographic Location | |
|---|---|
| Location Name | Japan:Hokkaido, Memuro-cho, Kamibisei |
| Isolation Source | leaf |
| Latitude/Longitude | 42.8 N 142.9 E |
| Environmental Feature (?) | farm |
| Environmental Material (?) | leaf |
| Sample Provider | |
|---|---|
| Name | |
| Institution | Department of Material and Environmental Chemistry, Graduate School of Engineering, Utsunomiya University |
| Date Collected | 2009-09-02 |
| Database | Scheme | Sequence Type | Alleles | |
|---|---|---|---|---|
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | |
| Assembly Status | latest |
| Scaffolds | |
| Contigs | |
| Contig N50 | |
| Assembly Level | Complete Genome |
| Percent GC | |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMD00019511 |
| NCBI Taxonomy ID | 1028989 |
| NCBI Bioprojects | |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information | |
| Genome Browsers* | ||
|---|---|---|
| Pseudomonas sp. StFLB209 DNA, complete genome. | ||
| Feature | Count |
|---|---|
| gene | 5592 |
| CDS | 5503 |
| tRNA | 69 |
| pseudo | 30 |
| rRNA | 19 |
| ncRNA | 1 |
| Localization | Count |
|---|---|
| Cytoplasmic | 2369 |
| Unknown | 1337 |
| Cytoplasmic Membrane | 1273 |
| Outer Membrane | 170 |
| Periplasmic | 162 |
| Unknown (This protein may have multiple localization sites) | 134 |
| Extracellular | 58 |
| Name | Length | GC | |
|---|---|---|---|
| Pseudomonas sp. StFLB209 DNA, complete genome. | 6332373 bp | 60.7% |
Replicon details
|
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |