| Strain Overview | |
|---|---|
| Organism Name | Pseudomonas sp. RIT288 |
| Species | Pseudomonas sp. |
| Strain | RIT288 |
| Description/Title | Microbe sample for Pseudomonas sp. |
| Annotated Genes | 5594 |
| Partial Genes | 99 |
| Host Information | |
|---|---|
| Host Species Taxonomic Name | Salix sp. |
| Host Species Common Name | willow |
| Host Species Taxonomy ID | 40685 |
| Geographic Location | |
|---|---|
| Location Name | USA:New York, Geneva |
| Sample Provider | |
|---|---|
| Name | Han Ming Gan |
| gan.han.ming@monash.edu | |
| Institution | Monash University Malaysia |
| Date Collected | 23-Jul-2013 |
| Database | Scheme | Sequence Type | Alleles | |
|---|---|---|---|---|
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | |
| Assembly Status | latest |
| Scaffolds | |
| Contigs | 44 |
| Contig N50 | 310222 |
| Assembly Level | Contig |
| Percent GC | |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN02676622 |
| NCBI Taxonomy ID | 1470589 |
| NCBI Bioprojects | |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information | |
| Feature | Count |
|---|---|
| gene | 5568 |
| CDS | 5486 |
| tRNA | 71 |
| pseudo | 26 |
| rRNA | 10 |
| ncRNA | 1 |
| Localization | Count |
|---|---|
| Cytoplasmic | 2411 |
| Cytoplasmic Membrane | 1293 |
| Unknown | 1287 |
| Periplasmic | 181 |
| Outer Membrane | 134 |
| Unknown (This protein may have multiple localization sites) | 125 |
| Extracellular | 55 |
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |