| Strain Overview | |
|---|---|
| Organism Name | Pseudomonas sp. PTA1 |
| Species | Pseudomonas sp. |
| Strain | PTA1 |
| Description/Title | Pseudomonas sp. PTA1 |
| Annotated Genes | 5474 |
| Partial Genes | 149 |
| Host Information |
|---|
| Geographic Location | |
|---|---|
| Environmental Feature (?) | missing |
| Environmental Material (?) | missing |
| Sample Provider | |
|---|---|
| Name | |
| Institution | DOE Joint Genome Institute |
| Date Collected | not collected |
| Database | Scheme | Sequence Type | Alleles | |
|---|---|---|---|---|
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | 42 |
| Contigs | 49 |
| Contig N50 | 287407 |
| Assembly Level | Scaffold |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN02787058 |
| NCBI Taxonomy ID | 1500297 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Feature | Count |
|---|---|
| gene | 5438 |
| CDS | 5369 |
| tRNA | 58 |
| pseudo | 36 |
| rRNA | 10 |
| ncRNA | 1 |
| Localization | Count |
|---|---|
| Cytoplasmic | 2338 |
| Cytoplasmic Membrane | 1222 |
| Periplasmic | 179 |
| Outer Membrane | 124 |
| Extracellular | 57 |
| Unknown | 1333 |
| Unknown (This protein may have multiple localization sites) | 116 |
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |