Pseudomonas sp. MT-1

Strain Overview
Organism Name Pseudomonas sp. MT-1
Species Pseudomonas sp.
Strain MT-1
Description/Title Hs_578T_JAK_inhibitor
Annotated Genes 4455
Partial Genes 62
Host Information
Geographic Location
Location Name Pacific Ocean: Mariana Trench
Isolation Source mud
Latitude/Longitude 32.694866 N 162.070312 W
Environmental Feature (?) deep sea
Environmental Material (?) mud
Sample Provider
Name
E-mail
Institution Nihon University
Date Collected 1997

MLST Data

Database Scheme Sequence Type Alleles
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000828755.1
Assembly Status latest
Scaffolds
Contigs 16
Contig N50 900078
Assembly Level Chromosome
Percent GC
Cross-References
NCBI BioSample Accession SAMD00017418
NCBI Taxonomy ID 9606
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details
Genome Browsers*
Pseudomonas sp. MT-1.

Annotated Features

Feature Count
gene 4405
CDS 4338
tRNA 57
pseudo 50
rRNA 9
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 1927
Cytoplasmic Membrane 1102
Periplasmic 129
Outer Membrane 83
Extracellular 43
Unknown 948
Unknown (This protein may have multiple localization sites) 106

Replicons

Name Length GC
Pseudomonas sp. MT-1. 4861258 bp 60.1%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF