| Strain Overview | |
|---|---|
| Organism Name | Pseudomonas sp. MRSN12121 |
| Species | Pseudomonas sp. |
| Strain | MRSN12121 |
| Description/Title | Pseudomonas MRSN12121: clinical isolate carrying the blaVIM-2 gene |
| Annotated Genes | 6394 |
| Partial Genes | 67 |
| Host Information | |
|---|---|
| Host Species Taxonomic Name | Homo sapiens |
| Host Species Common Name | human |
| Host Species Taxonomy ID | 9606 |
| Host Species Disease | Bacteriuria |
| Geographic Location | |
|---|---|
| Location Name | USA |
| Isolation Source | Urine |
| Latitude/Longitude | Unknown |
| Sample Provider | |
|---|---|
| Name | Erik Snesrud |
| esnesrud@gmail.com | |
| Institution | Walter Reed Army Institute of Research |
| Date Collected | Unknown |
| Database | Scheme | Sequence Type | Alleles | |
|---|---|---|---|---|
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | |
| Contigs | |
| Contig N50 | |
| Assembly Level | Complete Genome |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN03316900 |
| NCBI Taxonomy ID | 1611770 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Genome Browsers* | |
|---|---|
| Pseudomonas sp. MRSN12121, complete genome. | |
| Pseudomonas sp. MRSN12121 plasmid, complete sequence. | |
| Pseudomonas sp. MRSN12121 plasmid pMRVIM0812, complete sequence. |
| Feature | Count |
|---|---|
| gene | 6373 |
| CDS | 6286 |
| tRNA | 70 |
| pseudo | 21 |
| rRNA | 16 |
| ncRNA | 1 |
| Localization | Count |
|---|---|
| Cytoplasmic | 2685 |
| Cytoplasmic Membrane | 1417 |
| Periplasmic | 195 |
| Outer Membrane | 164 |
| Extracellular | 71 |
| Unknown | 1604 |
| Unknown (This protein may have multiple localization sites) | 150 |
| Name | Length | GC | |
|---|---|---|---|
| Pseudomonas sp. MRSN12121, complete genome. | 6929263 bp | 63.8% |
Replicon details
|
| Pseudomonas sp. MRSN12121 plasmid, complete sequence. | 21121 bp | 62.8% |
Replicon details
|
| Pseudomonas sp. MRSN12121 plasmid pMRVIM0812, complete sequence. | 36379 bp | 54.7% |
Replicon details
|
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |