Strain Overview | |
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Organism Name | Pseudomonas sp. ML96 |
Species | Pseudomonas sp. |
Strain | ML96 |
Description/Title | MIGS Cultured Bacterial/Archaeal sample from Pseudomonas sp. ML96 |
Annotated Genes | 4530 |
Partial Genes | 174 |
Host Information |
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Geographic Location | |
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Location Name | China: Zhanjiang City |
Isolation Source | bottom water from the Huguangyan Maar Lake in southern China |
Latitude/Longitude | 21.143 N 110.279 E |
Environmental Feature (?) | freshwater lake |
Environmental Material (?) | water |
Sample Provider | |
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Name | Yonghui Zeng |
marinezeng@gmail.com | |
Institution | Institute of Microbiology, ASCR |
Date Collected | Dec-2011 |
Database | Scheme | Sequence Type | Alleles | |
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Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). |
Assembly | |
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Assembly DB |
RefSeq
|
Assembly Accession | |
Assembly Status | latest |
Scaffolds | |
Contigs | 50 |
Contig N50 | 165116 |
Assembly Level | Scaffold |
Percent GC |
Cross-References | |
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NCBI BioSample Accession | SAMN02927160 |
NCBI Taxonomy ID | 1523503 |
NCBI Bioprojects |
Related Data | |
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Additional Genome Project Info | |
Sequencing Information | |
Genome Assembly Information |
Feature | Count |
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gene | 4523 |
CDS | 4472 |
tRNA | 47 |
pseudo | 7 |
rRNA | 3 |
ncRNA | 1 |
Localization | Count |
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Cytoplasmic | 1982 |
Cytoplasmic Membrane | 1055 |
Unknown | 1025 |
Unknown (This protein may have multiple localization sites) | 141 |
Outer Membrane | 116 |
Periplasmic | 114 |
Extracellular | 39 |
Genomic | ORF DNA | Intergenic | Amino Acid |
TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |