Pseudomonas sp. ML96

Strain Overview
Organism Name Pseudomonas sp. ML96
Species Pseudomonas sp.
Strain ML96
Description/Title MIGS Cultured Bacterial/Archaeal sample from Pseudomonas sp. ML96
Annotated Genes 4530
Partial Genes 174
Host Information
Geographic Location
Location Name China: Zhanjiang City
Isolation Source bottom water from the Huguangyan Maar Lake in southern China
Latitude/Longitude 21.143 N 110.279 E
Environmental Feature (?) freshwater lake
Environmental Material (?) water
Sample Provider
Name Yonghui Zeng
E-mail marinezeng@gmail.com
Institution Institute of Microbiology, ASCR
Date Collected Dec-2011

MLST Data

Database Scheme Sequence Type Alleles
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000761545.1
Assembly Status latest
Scaffolds
Contigs 50
Contig N50 165116
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN02927160
NCBI Taxonomy ID 1523503
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 4523
CDS 4472
tRNA 47
pseudo 7
rRNA 3
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 1982
Cytoplasmic Membrane 1055
Unknown 1025
Unknown (This protein may have multiple localization sites) 141
Outer Membrane 116
Periplasmic 114
Extracellular 39

Replicons

47 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF