| Strain Overview | |
|---|---|
| Organism Name | Pseudomonas sp. KG01 |
| Species | Pseudomonas sp. |
| Strain | KG01 |
| Description/Title | Antarctic isolate of Pseudomonas sp. (strain KG01) |
| Annotated Genes | 5773 |
| Partial Genes | 112 |
| Host Information |
|---|
| Geographic Location | |
|---|---|
| Location Name | Antarctica |
| Isolation Source | soil |
| Sample Provider | |
|---|---|
| Name | Maria Pavlov |
| msoledad.pavlov@gmail.com | |
| Institution | Pontificia Universidad Catolica de Valparaiso |
| Date Collected | 28-Feb-2012 |
| Database | Scheme | Sequence Type | Alleles | |
|---|---|---|---|---|
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | |
| Contigs | 47 |
| Contig N50 | 341169 |
| Assembly Level | Contig |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN03785348 |
| NCBI Taxonomy ID | 1674920 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Feature | Count |
|---|---|
| gene | 5727 |
| CDS | 5660 |
| tRNA | 59 |
| pseudo | 46 |
| rRNA | 7 |
| ncRNA | 1 |
| Localization | Count |
|---|---|
| Cytoplasmic | 2440 |
| Cytoplasmic Membrane | 1333 |
| Periplasmic | 212 |
| Outer Membrane | 151 |
| Extracellular | 64 |
| Unknown | 1333 |
| Unknown (This protein may have multiple localization sites) | 127 |
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |