| Strain Overview | |
|---|---|
| Organism Name | Pseudomonas sp. FGI182 |
| Species | Pseudomonas sp. |
| Strain | FGI182 |
| Description/Title | Generic sample from Pseudomonas plecoglossicida FGI182 |
| Annotated Genes | 5193 |
| Partial Genes | 48 |
| Host Information |
|---|
| Geographic Location |
|---|
| Sample Provider | |
|---|---|
| Name | |
| Institution | Joint Genome Institute, U.S. Department of Energy |
| Date Collected |
| Database | Scheme | Sequence Type | Alleles | |
|---|---|---|---|---|
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | |
| Contigs | |
| Contig N50 | |
| Assembly Level | Complete Genome |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN00261344 |
| NCBI Taxonomy ID | 1259844 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Genome Browsers* | |
|---|---|
| Pseudomonas sp. FGI182, complete genome. |
| Feature | Count |
|---|---|
| gene | 5162 |
| CDS | 5062 |
| tRNA | 74 |
| pseudo | 31 |
| rRNA | 22 |
| ncRNA | 1 |
| Localization | Count |
|---|---|
| Cytoplasmic | 2325 |
| Cytoplasmic Membrane | 1211 |
| Periplasmic | 165 |
| Outer Membrane | 134 |
| Extracellular | 36 |
| Unknown | 1071 |
| Unknown (This protein may have multiple localization sites) | 120 |
| Name | Length | GC | |
|---|---|---|---|
| Pseudomonas sp. FGI182, complete genome. | 5891312 bp | 63.3% |
Replicon details
|
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |