| Strain Overview | |
|---|---|
| Organism Name | Pseudomonas sp. FeS53a |
| Species | Pseudomonas sp. |
| Strain | FeS53a |
| Description/Title | Microbe sample from Pseudomonas sp. FeS53a |
| Annotated Genes | 5400 |
| Partial Genes | 168 |
| Host Information | |
|---|---|
| Host Species Taxonomic Name | Oryza sativa |
| Host Species Common Name | rice |
| Host Species Taxonomy ID | 4530 |
| Geographic Location | |
|---|---|
| Location Name | Brazil: Rio Grande do Sul, Camaqua |
| Isolation Source | root |
| Sample Provider | |
|---|---|
| Name | Fernando Sant'Anna |
| fhsantanna@yahoo.com.br | |
| Institution | UFRGS |
| Date Collected | 01-Dec-2010 |
| Database | Scheme | Sequence Type | Alleles | |
|---|---|---|---|---|
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | |
| Assembly Status | latest |
| Scaffolds | |
| Contigs | 92 |
| Contig N50 | 135143 |
| Assembly Level | Contig |
| Percent GC | |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN03288244 |
| NCBI Taxonomy ID | 1604022 |
| NCBI Bioprojects | |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information | |
| Feature | Count |
|---|---|
| gene | 5384 |
| CDS | 5314 |
| tRNA | 59 |
| pseudo | 16 |
| rRNA | 9 |
| ncRNA | 2 |
| Localization | Count |
|---|---|
| Cytoplasmic | 2440 |
| Cytoplasmic Membrane | 1200 |
| Unknown | 1164 |
| Periplasmic | 163 |
| Outer Membrane | 146 |
| Unknown (This protein may have multiple localization sites) | 143 |
| Extracellular | 58 |
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |