| Strain Overview | |
|---|---|
| Organism Name | Pseudomonas sp. DSM 28140 |
| Species | Pseudomonas sp. |
| Strain | DSM 28140 |
| Description/Title | Microbe sample from Pseudomonas sp. DSM 28140 |
| Annotated Genes | 4596 |
| Partial Genes | 118 |
| Host Information |
|---|
| Geographic Location | |
|---|---|
| Location Name | Germany: Southern Germany |
| Isolation Source | raw milk |
| Sample Provider | |
|---|---|
| Name | Mario von Neubeck |
| mario.von-neubeck@wzw.tum.de | |
| Institution | Zentralinstitut fuer Ernaehrungs- und Lebensmittelforschung (ZIEL), WZW, TUM |
| Date Collected | 22-Feb-2012 |
| Database | Scheme | Sequence Type | Alleles | |
|---|---|---|---|---|
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | |
| Contigs | 47 |
| Contig N50 | 427964 |
| Assembly Level | Contig |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN03328807 |
| NCBI Taxonomy ID | 1608993 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Feature | Count |
|---|---|
| gene | 4558 |
| CDS | 4483 |
| tRNA | 64 |
| pseudo | 38 |
| rRNA | 10 |
| ncRNA | 1 |
| Localization | Count |
|---|---|
| Cytoplasmic | 1878 |
| Cytoplasmic Membrane | 1015 |
| Periplasmic | 146 |
| Outer Membrane | 112 |
| Extracellular | 65 |
| Unknown | 1177 |
| Unknown (This protein may have multiple localization sites) | 90 |
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |