| Strain Overview | |
|---|---|
| Organism Name | Pseudomonas sp. C5pp |
| Species | Pseudomonas sp. |
| Strain | C5pp |
| Description/Title | Pseudomonas sp. C5pp isolated from soil sample |
| Annotated Genes | 5693 |
| Partial Genes | 135 |
| Host Information |
|---|
| Geographic Location | |
|---|---|
| Location Name | India: Mumbai |
| Isolation Source | soil |
| Latitude/Longitude | 19.13 N 72.91 E |
| Environmental Feature (?) | Soil |
| Environmental Material (?) | Soil |
| Sample Provider | |
|---|---|
| Name | Prashant Phale |
| pphale@iitb.ac.in | |
| Institution | Indian Institute of Technology, Bombay |
| Date Collected | 2004-06 |
| Database | Scheme | Sequence Type | Alleles | |
|---|---|---|---|---|
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | |
| Contigs | 97 |
| Contig N50 | 147962 |
| Assembly Level | Contig |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN03266147 |
| NCBI Taxonomy ID | 1586081 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Feature | Count |
|---|---|
| gene | 5659 |
| CDS | 5584 |
| tRNA | 68 |
| pseudo | 34 |
| rRNA | 4 |
| ncRNA | 3 |
| Localization | Count |
|---|---|
| Cytoplasmic | 2465 |
| Cytoplasmic Membrane | 1236 |
| Periplasmic | 173 |
| Outer Membrane | 132 |
| Extracellular | 48 |
| Unknown | 1395 |
| Unknown (This protein may have multiple localization sites) | 135 |
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |