| Strain Overview | |
|---|---|
| Organism Name | Pseudomonas sp. AAC |
| Species | Pseudomonas sp. |
| Strain | AAC |
| Description/Title | MIGS Cultured Bacterial/Archaeal sample from Pseudomonas sp. AAC |
| Annotated Genes | 6136 |
| Partial Genes | 196 |
| Host Information |
|---|
| Geographic Location | |
|---|---|
| Location Name | Australia |
| Isolation Source | water |
| Latitude/Longitude | 35.3080 S 149.1245 E |
| Environmental Feature (?) | city |
| Environmental Material (?) | ground water |
| Sample Provider | |
|---|---|
| Name | Matthew Wilding |
| matt.wilding@csiro.au | |
| Institution | CSIRO |
| Date Collected | 01-May-2010 |
| Database | Scheme | Sequence Type | Alleles | |
|---|---|---|---|---|
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | 25 |
| Contigs | 47 |
| Contig N50 | 343247 |
| Assembly Level | Scaffold |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN02799455 |
| NCBI Taxonomy ID | 1502784 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Feature | Count |
|---|---|
| gene | 6093 |
| CDS | 6019 |
| tRNA | 63 |
| pseudo | 43 |
| rRNA | 10 |
| ncRNA | 1 |
| Localization | Count |
|---|---|
| Cytoplasmic | 2803 |
| Cytoplasmic Membrane | 1315 |
| Periplasmic | 204 |
| Outer Membrane | 176 |
| Extracellular | 52 |
| Unknown | 1326 |
| Unknown (This protein may have multiple localization sites) | 143 |
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |