Pseudomonas simiae MEB105

Strain Overview
Organism Name Pseudomonas simiae MEB105
Species Pseudomonas simiae
Strain MEB105
Description/Title Microbe sample from Pseudomonas simiae
Annotated Genes 5608
Partial Genes 69
Host Information
Host Species Taxonomic Name Arabidopsis thaliana
Host Species Common Name thale cress
Host Species Taxonomy ID 3702
Host Species Tissue Sampled leaf
Geographic Location
Location Name USA: Michigan State University Extension, Berrien County, Michigan
Isolation Source leaf
Latitude/Longitude 42.0927 N 86.356322 W
Sample Provider
Name Matthew Perisin
E-mail perisin@uchicago.edu
Institution University of Chicago
Date Collected 2004-05-04

MLST Data

Database Scheme Sequence Type Alleles
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000834615.1
Assembly Status latest
Scaffolds
Contigs 44
Contig N50 461104
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN03267954
NCBI Taxonomy ID 321846
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 5595
CDS 5527
tRNA 63
pseudo 13
rRNA 4
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2414
Cytoplasmic Membrane 1330
Periplasmic 204
Outer Membrane 147
Extracellular 59
Unknown 1233
Unknown (This protein may have multiple localization sites) 140

Replicons

44 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF