| Strain Overview | |
|---|---|
| Organism Name | Pseudomonas simiae 2-36 |
| Species | Pseudomonas simiae |
| Strain | 2-36 |
| Description/Title | Microbe sample from Pseudomonas simiae |
| Annotated Genes | 5820 |
| Partial Genes | 91 |
| Host Information |
|---|
| Geographic Location | |
|---|---|
| Location Name | Canada: Woodslee, Ontario |
| Isolation Source | soil |
| Sample Provider | |
|---|---|
| Name | Zaky Adam |
| zadam008@uottawa.ca | |
| Institution | Agriculture and Agri-Food Canada |
| Date Collected | Oct-2009 |
| Database | Scheme | Sequence Type | Alleles | |
|---|---|---|---|---|
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | |
| Assembly Status | latest |
| Scaffolds | 20 |
| Contigs | 21 |
| Contig N50 | 754763 |
| Assembly Level | Scaffold |
| Percent GC | |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN03078485 |
| NCBI Taxonomy ID | 321846 |
| NCBI Bioprojects | |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information | |
| Feature | Count |
|---|---|
| gene | 5793 |
| CDS | 5706 |
| tRNA | 65 |
| pseudo | 27 |
| rRNA | 21 |
| ncRNA | 1 |
| Localization | Count |
|---|---|
| Cytoplasmic | 2500 |
| Cytoplasmic Membrane | 1360 |
| Unknown | 1288 |
| Periplasmic | 207 |
| Outer Membrane | 149 |
| Unknown (This protein may have multiple localization sites) | 135 |
| Extracellular | 67 |
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |