| Strain Overview | |
|---|---|
| Organism Name | Pseudomonas putida H |
| Species | Pseudomonas putida |
| Strain | H |
| Description/Title | Sample from Pseudomonas putida |
| Annotated Genes | 5526 |
| Partial Genes | 67 |
| Host Information |
|---|
| Geographic Location | |
|---|---|
| Location Name | Germany |
| Isolation Source | soil |
| Sample Provider | |
|---|---|
| Name | ignacio poblete |
| ignaciopobletec@gmail.com | |
| Institution | universidad andres bello |
| Date Collected | 2014 |
| Database | Scheme | Sequence Type | Alleles | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| PubMLST | pputida | 69 |
|
||||||||
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | |||||||||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | |
| Assembly Status | latest |
| Scaffolds | |
| Contigs | 59 |
| Contig N50 | 185134 |
| Assembly Level | Scaffold |
| Percent GC | |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN03839260 |
| NCBI Taxonomy ID | 303 |
| NCBI Bioprojects | |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information | |
| Feature | Count |
|---|---|
| gene | 5478 |
| CDS | 5403 |
| tRNA | 67 |
| pseudo | 48 |
| rRNA | 5 |
| ncRNA | 1 |
| Localization | Count |
|---|---|
| Cytoplasmic | 2409 |
| Unknown | 1275 |
| Cytoplasmic Membrane | 1232 |
| Periplasmic | 159 |
| Outer Membrane | 146 |
| Unknown (This protein may have multiple localization sites) | 137 |
| Extracellular | 45 |
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |