Pseudomonas putida PD1

Strain Overview
Organism Name Pseudomonas putida PD1
Species Pseudomonas putida
Strain PD1
Description/Title Pseudomonas putida PD1
Annotated Genes 5352
Partial Genes 97
Host Information
Host Species Taxonomic Name Populus
Host Species Common Name poplar
Host Species Taxonomy ID 3689
Geographic Location
Isolation Source poplar endophyte
Environmental Feature (?) missing
Environmental Material (?) missing
Sample Provider
Name
E-mail
Institution DOE Joint Genome Institute
Date Collected not collected

MLST Data

Database Scheme Sequence Type Alleles
PubMLST pputida -
gyrB
~47		 nuoC
~4		 rpoD
10		 argS
47		 rpoB
1		 ileS
11		 recA
10		 ppsA
6
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000799625.1
Assembly Status latest
Scaffolds 37
Contigs 57
Contig N50 230906
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN02787146
NCBI Taxonomy ID 303
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 5334
CDS 5255
tRNA 66
pseudo 18
rRNA 11
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2417
Cytoplasmic Membrane 1241
Periplasmic 162
Outer Membrane 154
Extracellular 45
Unknown 1101
Unknown (This protein may have multiple localization sites) 135

Replicons

37 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF