Pseudomonas parafulva NBRC 16636 = DSM 17004

Strain Overview
Organism Name Pseudomonas parafulva NBRC 16636 = DSM 17004 - Assembly GCF_000730645.1
Species Pseudomonas parafulva
Strain NBRC 16636 = DSM 17004
Description/Title Human metagenome DNA sample from stool of a male participant in the dbGaP study "The Neonatal Microbiome and NEC"
Annotated Genes 4461
Partial Genes 67
Host Information
Geographic Location
Location Name Japan
Isolation Source rice paddy
Environmental Feature (?) NA
Environmental Material (?) rice paddy
Sample Provider
Name
E-mail
Institution National Institute of Technology and Evaluation Biological Resource Center
Date Collected NA

MLST Data

Database Scheme Sequence Type Alleles
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000730645.1
Assembly Status latest
Scaffolds
Contigs 55
Contig N50 192670
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMD00018428
NCBI Taxonomy ID 646099
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 4429
CDS 4364
tRNA 59
pseudo 32
rRNA 5
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 1991
Cytoplasmic Membrane 1006
Periplasmic 152
Outer Membrane 115
Extracellular 33
Unknown 967
Unknown (This protein may have multiple localization sites) 100

Replicons

55 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF