| Strain Overview | |
|---|---|
| Organism Name | Pseudomonas oryzihabitans RIT370 |
| Species | Pseudomonas oryzihabitans |
| Strain | RIT370 |
| Description/Title | Pseudomonas oryzihabitans RIT370 isolated from Capsicum chinense |
| Annotated Genes | 4665 |
| Partial Genes | 79 |
| Host Information | |
|---|---|
| Host Species Taxonomic Name | Capsicum chinense |
| Host Species Common Name | Scotch Bonnet |
| Host Species Taxonomy ID | 80379 |
| Geographic Location | |
|---|---|
| Location Name | USA: Rochester, New York |
| Sample Provider | |
|---|---|
| Name | Han Ming Gan |
| hxg2760@gmail.com | |
| Institution | Monash University Malaysia |
| Date Collected | 2014-10-11 |
| Database | Scheme | Sequence Type | Alleles | |
|---|---|---|---|---|
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | |
| Contigs | 47 |
| Contig N50 | 222589 |
| Assembly Level | Contig |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN03365871 |
| NCBI Taxonomy ID | 47885 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Feature | Count |
|---|---|
| gene | 4651 |
| CDS | 4581 |
| tRNA | 59 |
| pseudo | 14 |
| rRNA | 8 |
| ncRNA | 3 |
| Localization | Count |
|---|---|
| Cytoplasmic | 2097 |
| Cytoplasmic Membrane | 1132 |
| Periplasmic | 144 |
| Outer Membrane | 85 |
| Extracellular | 35 |
| Unknown | 977 |
| Unknown (This protein may have multiple localization sites) | 111 |
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |