Pseudomonas mediterranea CFBP 5447

Strain Overview
Organism Name Pseudomonas mediterranea CFBP 5447
Species Pseudomonas mediterranea
Strain CFBP 5447
Description/Title Microbe sample from Pseudomonas mediterranea CFBP 5447
Annotated Genes 5536
Partial Genes 135
Host Information
Host Species Taxonomic Name Solanum lycopersicum
Host Species Common Name tomato
Host Species Taxonomy ID 4081
Host Species Disease pith necrosis
Geographic Location
Location Name Italy
Isolation Source tomato
Sample Provider
Name Grazia Licciardello
E-mail glicciardello@pstsicilia.it
Institution Parco Scientifico e tecnologico della Sicilia
Date Collected 2002

MLST Data

Database Scheme Sequence Type Alleles
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000774145.1
Assembly Status latest
Scaffolds 32
Contigs 43
Contig N50 662701
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN03112705
NCBI Taxonomy ID 1348058
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 5511
CDS 5455
tRNA 53
pseudo 25
rRNA 2
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2452
Cytoplasmic Membrane 1231
Periplasmic 167
Outer Membrane 119
Extracellular 50
Unknown 1300
Unknown (This protein may have multiple localization sites) 136

Replicons

32 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF