Pseudomonas fulva NBRC 16636 = DSM 17004

Strain Overview
Organism Name Pseudomonas fulva NBRC 16636 = DSM 17004 - Assembly GCF_000730565.1
Species Pseudomonas fulva
Strain NBRC 16636 = DSM 17004
Description/Title Human metagenome DNA sample from stool of a female participant in the dbGaP study "The Neonatal Microbiome and NEC"
Annotated Genes 4265
Partial Genes 70
Host Information
Geographic Location
Location Name Japan
Isolation Source rice paddy
Latitude/Longitude NA
Environmental Feature (?) rice paddy
Environmental Material (?) rice paddy
Sample Provider
Name
E-mail
Institution National Institute of Technology and Evaluation
Date Collected NA

MLST Data

Database Scheme Sequence Type Alleles
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000730565.1
Assembly Status latest
Scaffolds
Contigs 46
Contig N50 190636
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMD00018425
NCBI Taxonomy ID 646099
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 4232
CDS 4162
tRNA 61
pseudo 33
rRNA 6
ncRNA 3

Subcellular Localization

Localization Count
Cytoplasmic 1912
Cytoplasmic Membrane 962
Periplasmic 133
Outer Membrane 101
Extracellular 33
Unknown 928
Unknown (This protein may have multiple localization sites) 93

Replicons

46 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF