Pseudomonas fluorescens AU11114

Strain Overview
Organism Name Pseudomonas fluorescens AU11114
Species Pseudomonas fluorescens
Strain AU11114
Description/Title MIGS Cultured Bacterial/Archaeal sample from Pseudomonas fluorescens
Annotated Genes 5614
Partial Genes 127
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Geographic Location
Location Name USA
Latitude/Longitude 41.2500 N 96.0000 W
Sample Provider
Name Brittan Scales
E-mail britstar@umich.edu
Institution University of Michigan, Ann Arbor
Date Collected 28-Jul-2006

MLST Data

Database Scheme Sequence Type Alleles
PubMLST pfluorescens -
rpoB
63		 recA
69?		 ileS
49?		 glnS
~69		 rpoD
~61		 gyrB
47?		 nuoD
~50
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001020875.1
Assembly Status latest
Scaffolds
Contigs 64
Contig N50 277514
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN03650329
NCBI Taxonomy ID 294
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 5583
CDS 5511
tRNA 60
pseudo 31
rRNA 11
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2358
Unknown 1394
Cytoplasmic Membrane 1269
Periplasmic 175
Outer Membrane 128
Unknown (This protein may have multiple localization sites) 126
Extracellular 61

Replicons

64 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF