| Strain Overview | |
|---|---|
| Organism Name | Pseudomonas fluorescens AU11122 |
| Species | Pseudomonas fluorescens |
| Strain | AU11122 |
| Description/Title | MIGS Cultured Bacterial/Archaeal sample from Pseudomonas fluorescens |
| Annotated Genes | 4415 |
| Partial Genes | 95 |
| Host Information | |
|---|---|
| Host Species Taxonomic Name | Homo sapiens |
| Host Species Common Name | human |
| Host Species Taxonomy ID | 9606 |
| Geographic Location | |
|---|---|
| Location Name | USA |
| Latitude/Longitude | 37.4292 N 122.1381 W |
| Sample Provider | |
|---|---|
| Name | Brittan Scales |
| britstar@umich.edu | |
| Institution | University of Michigan, Ann Arbor |
| Date Collected | 04-May-2006 |
| Database | Scheme | Sequence Type | Alleles | |||||||
|---|---|---|---|---|---|---|---|---|---|---|
| PubMLST | pfluorescens | - |
|
|||||||
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||||||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | |
| Contigs | 58 |
| Contig N50 | 283960 |
| Assembly Level | Contig |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN03650288 |
| NCBI Taxonomy ID | 294 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Feature | Count |
|---|---|
| gene | 4391 |
| CDS | 4321 |
| tRNA | 62 |
| pseudo | 24 |
| rRNA | 7 |
| ncRNA | 1 |
| Localization | Count |
|---|---|
| Cytoplasmic | 1915 |
| Cytoplasmic Membrane | 991 |
| Periplasmic | 142 |
| Outer Membrane | 112 |
| Extracellular | 51 |
| Unknown | 1014 |
| Unknown (This protein may have multiple localization sites) | 96 |
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |