Pseudomonas fluorescens AU2390

Strain Overview
Organism Name Pseudomonas fluorescens AU2390
Species Pseudomonas fluorescens
Strain AU2390
Description/Title MIGS Cultured Bacterial/Archaeal sample from Pseudomonas fluorescens
Annotated Genes 4985
Partial Genes 171
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Geographic Location
Location Name USA
Latitude/Longitude 42.3601 N 71.0589 W
Environmental Feature (?) not applicable
Environmental Material (?) not applicable
Sample Provider
Name Brittan Scales
E-mail britstar@umich.edu
Institution University of Michigan, Ann Arbor
Date Collected 02-Oct-2000

MLST Data

Database Scheme Sequence Type Alleles
PubMLST pfluorescens -
gyrB
63		 ileS
~15		 rpoD
15		 recA
60		 glnS
63		 rpoB
60		 nuoD
65
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001020765.1
Assembly Status latest
Scaffolds
Contigs 93
Contig N50 181346
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN03650285
NCBI Taxonomy ID 294
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 4954
CDS 4888
tRNA 59
pseudo 31
rRNA 5
ncRNA 2

Subcellular Localization

Localization Count
Cytoplasmic 2140
Cytoplasmic Membrane 1069
Periplasmic 147
Outer Membrane 116
Extracellular 59
Unknown 1259
Unknown (This protein may have multiple localization sites) 98

Replicons

93 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF