Pseudomonas fluorescens PCL1751

Strain Overview
Organism Name Pseudomonas fluorescens PCL1751
Species Pseudomonas fluorescens
Strain PCL1751
Description/Title Pseudomonas fluorescens PCL1751
Annotated Genes 5603
Partial Genes 39
Host Information
Host Species Taxonomic Name Solanum lycopersicum
Host Species Common Name tomato
Host Species Taxonomy ID 4081
Geographic Location
Location Name Uzbekistan
Isolation Source soil
Latitude/Longitude Not available
Sample Provider
Name Chih-Horng Kuo
E-mail chk@gate.sinica.edu.tw
Institution Academia Sinica
Date Collected 2005

MLST Data

Database Scheme Sequence Type Alleles
PubMLST pfluorescens -
gyrB
41		 rpoB
~65		 glnS
~48		 ileS
~50		 rpoD
36		 nuoD
~42		 recA
38
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000934565.1
Assembly Status latest
Scaffolds
Contigs
Contig N50
Assembly Level Complete Genome
Percent GC
Cross-References
NCBI BioSample Accession SAMN03372067
NCBI Taxonomy ID 294
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details
Genome Browsers*
Pseudomonas fluorescens strain PCL1751, complete genome.

Annotated Features

Feature Count
gene 5584
CDS 5494
tRNA 70
pseudo 19
rRNA 19
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2399
Cytoplasmic Membrane 1312
Unknown 1229
Periplasmic 207
Outer Membrane 151
Unknown (This protein may have multiple localization sites) 136
Extracellular 60

Replicons

Name Length GC
Pseudomonas fluorescens strain PCL1751, complete genome. 6143950 bp 60.4%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF