| Strain Overview | |
|---|---|
| Organism Name | Pseudomonas fluorescens SF4c |
| Species | Pseudomonas fluorescens |
| Strain | SF4c |
| Description/Title | Pseudomonas fluorescens strains from the collection of Sonia Fischer |
| Annotated Genes | 5826 |
| Partial Genes | 102 |
| Host Information |
|---|
| Geographic Location | |
|---|---|
| Location Name | Argentina: Cordoba |
| Isolation Source | wheat rhizosphere |
| Sample Provider | |
|---|---|
| Name | Mark Silby |
| marksilby@gmail.com | |
| Institution | University of Massachusetts Dartmouth |
| Date Collected | missing |
| Database | Scheme | Sequence Type | Alleles | |||||||
|---|---|---|---|---|---|---|---|---|---|---|
| PubMLST | pfluorescens | - |
|
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| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||||||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | |
| Assembly Status | latest |
| Scaffolds | |
| Contigs | 47 |
| Contig N50 | 320109 |
| Assembly Level | Contig |
| Percent GC | |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN03140176 |
| NCBI Taxonomy ID | 294 |
| NCBI Bioprojects | |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information | |
| Feature | Count |
|---|---|
| gene | 5797 |
| CDS | 5736 |
| tRNA | 55 |
| pseudo | 29 |
| rRNA | 4 |
| ncRNA | 2 |
| Localization | Count |
|---|---|
| Cytoplasmic | 2539 |
| Unknown | 1352 |
| Cytoplasmic Membrane | 1321 |
| Periplasmic | 184 |
| Unknown (This protein may have multiple localization sites) | 144 |
| Outer Membrane | 135 |
| Extracellular | 61 |
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |