Pseudomonas fluorescens UK4

Strain Overview
Organism Name Pseudomonas fluorescens UK4
Species Pseudomonas fluorescens
Strain UK4
Description/Title MIGS Cultured Bacterial/Archaeal sample from Pseudomonas fluorescens
Annotated Genes 5461
Partial Genes 141
Host Information
Geographic Location
Location Name Denmark: Aalborg
Latitude/Longitude 57.0270 N 9.9447 E
Environmental Feature (?) NA
Environmental Material (?) NA
Sample Provider
Name Morten Dueholm
E-mail md@bio.aau.dk
Institution Aalborg University
Date Collected Sep-2005

MLST Data

Database Scheme Sequence Type Alleles
PubMLST pfluorescens -
glnS
45?		 ileS
47?		 recA
~43		 rpoB
~65		 rpoD
~41		 nuoD
~48		 gyrB
-
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000730425.1
Assembly Status latest
Scaffolds
Contigs
Contig N50
Assembly Level Complete Genome
Percent GC
Cross-References
NCBI BioSample Accession SAMN02900729
NCBI Taxonomy ID 294
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details
Genome Browsers*
Pseudomonas fluorescens strain UK4, complete genome.

Annotated Features

Feature Count
gene 5425
CDS 5337
tRNA 68
pseudo 36
rRNA 19
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2330
Unknown 1264
Cytoplasmic Membrane 1250
Periplasmic 170
Outer Membrane 146
Unknown (This protein may have multiple localization sites) 133
Extracellular 44

Replicons

Name Length GC
Pseudomonas fluorescens strain UK4, complete genome. 6064456 bp 60.1%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF