Pseudomonas cremoricolorata ND07

Strain Overview
Organism Name Pseudomonas cremoricolorata ND07
Species Pseudomonas cremoricolorata
Strain ND07
Description/Title Microbe sample from Pseudomonas cremoricolorata
Annotated Genes 4305
Partial Genes 150
Host Information
Geographic Location
Location Name Malaysia
Isolation Source waterfall
Sample Provider
Name NINA YUSRINA MUHAMAD YUNOS
E-mail ninayusrina@hotmail.com
Institution UNIVERSITY OF MALAYA
Date Collected 01-Oct-2013

MLST Data

Database Scheme Sequence Type Alleles
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000759535.1
Assembly Status latest
Scaffolds
Contigs
Contig N50
Assembly Level Complete Genome
Percent GC
Cross-References
NCBI BioSample Accession SAMN03068908
NCBI Taxonomy ID 157783
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details
Genome Browsers*
Pseudomonas cremoricolorata strain ND07, complete genome.

Annotated Features

Feature Count
gene 4256
CDS 4156
tRNA 73
pseudo 49
rRNA 19
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 1844
Unknown 982
Cytoplasmic Membrane 965
Periplasmic 123
Outer Membrane 120
Unknown (This protein may have multiple localization sites) 92
Extracellular 30

Replicons

Name Length GC
Pseudomonas cremoricolorata strain ND07, complete genome. 4780403 bp 63.2%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF