Pseudomonas cichorii JBC1

Strain Overview
Organism Name Pseudomonas cichorii JBC1
Species Pseudomonas cichorii
Strain JBC1
Description/Title Pathogen: clinical or host-associated sample from Pseudomonas cichorii JBC1
Annotated Genes 5146
Partial Genes 161
Host Information
Host Species Taxonomic Name Glycine max
Host Species Common Name soybean
Host Species Taxonomy ID 3847
Host Species Disease leaf spot
Geographic Location
Location Name South Korea
Sample Provider
Name
E-mail
Institution
Date Collected missing

MLST Data

Database Scheme Sequence Type Alleles
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000517305.1
Assembly Status latest
Scaffolds
Contigs
Contig N50
Assembly Level Complete Genome
Percent GC
Cross-References
NCBI BioSample Accession SAMN02641561
NCBI Taxonomy ID 1441629
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details
Genome Browsers*
Pseudomonas cichorii JBC1, complete genome.

Annotated Features

Feature Count
gene 5120
CDS 5035
tRNA 65
pseudo 26
rRNA 19
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2177
Cytoplasmic Membrane 1219
Periplasmic 147
Outer Membrane 132
Extracellular 62
Unknown 1169
Unknown (This protein may have multiple localization sites) 129

Replicons

Name Length GC
Pseudomonas cichorii JBC1, complete genome. 5986012 bp 58.1%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF