| Strain Overview | |
|---|---|
| Organism Name | Pseudomonas amygdali pv. tabaci ATCC 11528 - Assembly GCF_001006455.1 |
| Species | Pseudomonas amygdali pv. tabaci |
| Strain | ATCC 11528 |
| Description/Title | Microbe sample from Pseudomonas amygdali pv. tabaci str. ATCC 11528 |
| Annotated Genes | 5450 |
| Partial Genes | 56 |
| Host Information | |
|---|---|
| Host Species Taxonomic Name | Nicotiana tabacum |
| Host Species Common Name | common tobacco |
| Host Species Taxonomy ID | 4097 |
| Geographic Location |
|---|
| Sample Provider | |
|---|---|
| Name | Haeyoung Jeong |
| hyjeong@kribb.re.kr | |
| Institution | KRIBB |
| Date Collected |
| Database | Scheme | Sequence Type | Alleles | |
|---|---|---|---|---|
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | |
| Contigs | 34 |
| Contig N50 | 342227 |
| Assembly Level | Scaffold |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN03610501 |
| NCBI Taxonomy ID | 573066 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Feature | Count |
|---|---|
| gene | 5389 |
| CDS | 5324 |
| pseudo | 61 |
| tRNA | 56 |
| rRNA | 6 |
| ncRNA | 2 |
| Localization | Count |
|---|---|
| Cytoplasmic | 2306 |
| Cytoplasmic Membrane | 1223 |
| Periplasmic | 178 |
| Outer Membrane | 116 |
| Extracellular | 75 |
| Unknown | 1299 |
| Unknown (This protein may have multiple localization sites) | 127 |
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |