Pseudomonas aeruginosa F9676

Strain Overview
Organism Name Pseudomonas aeruginosa F9676
Species Pseudomonas aeruginosa
Strain F9676
Description/Title Microbe sample from Pseudomonas aeruginosa
Annotated Genes 5827
Partial Genes 13
Host Information
Host Species Taxonomic Name Oryza sativa
Host Species Common Name rice
Host Species Taxonomy ID 4530
Geographic Location
Location Name China: Hangzhou
Sample Provider
Name Longbiao Guo
E-mail guolongbiao@caas.cn
Institution China National Rice Research Institute
Date Collected 2009

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa -
guaA
11		 nuoD
4		 trpE
37		 ppsA
28		 aroE
5		 acsA
40		 mutL
5
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001077475.1
Assembly Status latest
Scaffolds
Contigs
Contig N50
Assembly Level Complete Genome
Percent GC
Cross-References
NCBI BioSample Accession SAMN03852256
NCBI Taxonomy ID 287
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details
Genome Browsers*
Pseudomonas aeruginosa strain F9676, complete genome.

Annotated Features

Feature Count
gene 5805
CDS 5729
tRNA 63
pseudo 22
rRNA 12
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2639
Cytoplasmic Membrane 1325
Unknown 1216
Periplasmic 170
Outer Membrane 162
Unknown (This protein may have multiple localization sites) 148
Extracellular 69

Replicons

Name Length GC
Pseudomonas aeruginosa strain F9676, complete genome. 6368008 bp 66.5%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF