Pseudomonas aeruginosa MH19

Strain Overview
Organism Name Pseudomonas aeruginosa MH19
Species Pseudomonas aeruginosa
Strain MH19
Description/Title Plant sample from Helianthus annuus
Annotated Genes 6629
Partial Genes 101
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Host Species Disease urinary tract infection
Geographic Location
Isolation Source catheter
Environmental Feature (?) urine tract
Environmental Material (?) infection
Sample Provider
Name Jennifer Mandel
E-mail jmandel@memphis.edu
Institution European Bioinformatics Institute
Date Collected 2010

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa -
aroE
5		 nuoD
~3		 ppsA
~13		 acsA
28		 guaA
36		 mutL
3		 trpE
7
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001051345.1
Assembly Status latest
Scaffolds
Contigs 32
Contig N50 697135
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMEA2786265
NCBI Taxonomy ID 4232
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 6477
CDS 6403
pseudo 152
tRNA 66
rRNA 7
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2860
Unknown 1566
Cytoplasmic Membrane 1417
Periplasmic 176
Outer Membrane 162
Unknown (This protein may have multiple localization sites) 154
Extracellular 68

Replicons

32 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF