Pseudomonas aeruginosa DSM 50071

Strain Overview
Organism Name Pseudomonas aeruginosa DSM 50071 - Assembly GCF_001045685.1
Species Pseudomonas aeruginosa
Strain DSM 50071
Description/Title Pseudomonas aeruginosa strain:DSM 50071
Annotated Genes 5803
Partial Genes 3
Host Information
Geographic Location
Sample Provider
Name Kazuma Nakano
E-mail nakano@oias.or.jp
Institution Okinawa Institute of Advanced Sciences
Date Collected

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa -
nuoD
3		 mutL
11		 guaA
1		 trpE
7		 acsA
175		 ppsA
6		 aroE
5
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001045685.1
Assembly Status latest
Scaffolds
Contigs
Contig N50
Assembly Level Complete Genome
Percent GC
Cross-References
NCBI BioSample Accession SAMN03761153
NCBI Taxonomy ID 1123015
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details
Genome Browsers*
Pseudomonas aeruginosa DSM 50071, complete genome.

Annotated Features

Feature Count
gene 5790
CDS 5713
tRNA 64
pseudo 13
rRNA 12
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2618
Cytoplasmic Membrane 1331
Periplasmic 164
Outer Membrane 162
Extracellular 73
Unknown 1216
Unknown (This protein may have multiple localization sites) 149

Replicons

Name Length GC
Pseudomonas aeruginosa DSM 50071, complete genome. 6317050 bp 66.5%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF