Pseudomonas aeruginosa isolate RN21

Strain Overview
Organism Name Pseudomonas aeruginosa isolate RN21
Species Pseudomonas aeruginosa
Strain isolate RN21
Description/Title Sample from Salmonella enterica subsp. enterica serovar Typhimurium
Annotated Genes 6697
Partial Genes 166
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Host Species Disease urinary tract infection
Geographic Location
Location Name Germany
Isolation Source urine
Sample Provider
Name
E-mail
Institution CEBITEC
Date Collected 2009

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 395
acsA
6		 ppsA
12		 aroE
5		 guaA
1		 nuoD
1		 trpE
1		 mutL
1
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001028745.1
Assembly Status latest
Scaffolds
Contigs 83
Contig N50 171080
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMEA3302518
NCBI Taxonomy ID 90371
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 6620
CDS 6554
pseudo 77
tRNA 59
ncRNA 4
rRNA 3

Subcellular Localization

Localization Count
Cytoplasmic 2879
Cytoplasmic Membrane 1426
Periplasmic 178
Outer Membrane 168
Extracellular 83
Unknown 1672
Unknown (This protein may have multiple localization sites) 148

Replicons

83 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF