Pseudomonas aeruginosa MRSN 321

Strain Overview
Organism Name Pseudomonas aeruginosa MRSN 321
Species Pseudomonas aeruginosa
Strain MRSN 321
Description/Title Pathogen: clinical or host-associated sample from Pseudomonas aeruginosa MRSN 321
Annotated Genes 5775
Partial Genes 49
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Host Species Disease infection
Geographic Location
Location Name USA: DC-Baltimore area
Isolation Source wound
Latitude/Longitude 38.975 N 77.030 W
Sample Provider
Name Jessica DePew
E-mail jdepew@jcvi.org
Institution J. Craig Venter Institute
Date Collected 29-Jul-2010

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 663
aroE
5		 ppsA
15		 guaA
11		 trpE
1		 acsA
6		 mutL
29		 nuoD
3
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000982155.1
Assembly Status latest
Scaffolds
Contigs 24
Contig N50 792494
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN03486517
NCBI Taxonomy ID 1410038
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 5760
CDS 5699
tRNA 54
pseudo 15
rRNA 6
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2610
Cytoplasmic Membrane 1323
Unknown 1223
Periplasmic 169
Outer Membrane 162
Unknown (This protein may have multiple localization sites) 148
Extracellular 64

Replicons

24 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF