| Strain Overview | |
|---|---|
| Organism Name | Pseudomonas aeruginosa MRSN 317 |
| Species | Pseudomonas aeruginosa |
| Strain | MRSN 317 |
| Description/Title | Pathogen: clinical or host-associated sample from Pseudomonas aeruginosa MRSN 317 |
| Annotated Genes | 5906 |
| Partial Genes | 71 |
| Host Information | |
|---|---|
| Host Species Taxonomic Name | Homo sapiens |
| Host Species Common Name | human |
| Host Species Taxonomy ID | 9606 |
| Host Species Disease | infection |
| Geographic Location | |
|---|---|
| Location Name | USA: DC-Baltimore area |
| Isolation Source | wound |
| Latitude/Longitude | 38.975 N 77.030 W |
| Sample Provider | |
|---|---|
| Name | Jessica DePew |
| jdepew@jcvi.org | |
| Institution | J. Craig Venter Institute |
| Date Collected | 09-Jun-2010 |
| Database | Scheme | Sequence Type | Alleles | |||||||
|---|---|---|---|---|---|---|---|---|---|---|
| PubMLST | paeruginosa | 137 |
|
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| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||||||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | |
| Assembly Status | latest |
| Scaffolds | |
| Contigs | 37 |
| Contig N50 | 261625 |
| Assembly Level | Contig |
| Percent GC | |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN03486516 |
| NCBI Taxonomy ID | 1410037 |
| NCBI Bioprojects | |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information | |
| Feature | Count |
|---|---|
| gene | 5876 |
| CDS | 5815 |
| tRNA | 55 |
| pseudo | 30 |
| rRNA | 5 |
| ncRNA | 1 |
| Localization | Count |
|---|---|
| Cytoplasmic | 2625 |
| Cytoplasmic Membrane | 1318 |
| Unknown | 1313 |
| Periplasmic | 174 |
| Outer Membrane | 170 |
| Unknown (This protein may have multiple localization sites) | 144 |
| Extracellular | 71 |
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |